Cranks-no-start after battery drain

Marty123, so I finally figured out that we had a direct short on the harness that runs behind the engine and firewall. The clip that secures the harness to the firewall has broken allowing the harness to shift and rest on top of the back valve cover stud. Over time it had rubbed a hole in the wire loom wrap and eventually the wire. I've resecured it up and away from the contact point. It's currently running. If it gives me anymore trouble down the road it's going to be a job repairing the wire!

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Great to hear that you found it. In my case, it turned out to be the PCM. I’ll write a concluding post about it after this.
 
I thought I’d write a final update now that I’ve finally got the Jeep running again.

I went through quite a few stages during the troubleshooting process. Among other things, I converted the alternator setup to use an external voltage regulator and installed one. After that, the engine ran fine for about 10 minutes, then stalled a couple of times, and eventually went completely dead. It would no longer boot up properly.

A 10A fuse kept blowing, but I noticed that it did not blow when the PCM was disconnected. I then removed and opened up the PCM, and found a couple of obviously burnt chips/resistors on the board.

After that I tried to figure out whether it could be repaired cheaply, but in the end I decided to order a replacement PCM from a company in the US called Drivetech, which I found on eBay. It was a refurbished PCM, programmed for my Jeep model and with my VIN.

It arrived here in Sweden after about two weeks, and after paying VAT and customs fees, I finally had the “new” PCM in my hands.

Did I install and test it without being 100% sure that there wasn’t still an underlying issue, such as a short in the wiring harness? Yes, I did.

And the Jeep started right up.

At first, both the check engine light and the battery light were on, but they went out gradually after a few starts/drives.

So, in summary: the root cause in my case was the PCM. It is still possible that a failed alternator damaged the PCM in the first place, but that part remains a bit unclear.

For now, the Jeep is running beautifully again.

Feel free to ask if you have any questions — there’s plenty more to tell.
 
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